A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis

Bethan F Manley, Jaruwatana S Lotharukpong, Josué Barrera-Redondo, Gokalp Yildirir, Jana Sperschneider, Nicolas Corradi, Uta Paszkowski, Eric A Miska, Alexandra Dallaire

G3: Genes, Genomes, Genetics, vol. 13(6), Cold Spring Harbor Laboratory, 2023, pp. jkad077

Population genomics of domesticated Cucurbita ficifolia reveals a recent bottleneck and low gene flow with wild relatives

Xitlali Aguirre-Dugua, Josué Barrera-Redondo, Jaime Gasca-Pineda, Alejandra Vázquez-Lobo, Andrea López-Camacho, Guillermo Sánchez-de la Vega, Gabriela Castellanos-Morales, Enrique Scheinvar, Erika Aguirre-Planter, Rafael Lira-Saade, Luis E. Eguiarte

Plants, vol. 12(23), 2023, p. 3989

The domestication of Cucurbita argyrosperma as revealed by the genome of its wild relative

Josué Barrera-Redondo, Guillermo Sánchez-de La Vega, Jonás A Aguirre-Liguori, Gabriela Castellanos-Morales, Yocelyn T Gutiérrez-Guerrero, Xitlali Aguirre-Dugua, Erika Aguirre-Planter, Maud I Tenaillon, Rafael Lira-Saade, Luis E Eguiarte

Horticulture Research, vol. 8, Oxford Academic, 2021, p. 109

Evolution of life cycles and reproductive traits: insights from the brown algae

Svenja Heesch, Martha Serrano-Serrano, Josué Barrera-Redondo, Rémy Luthringer, Akira F Peters, Christophe Destombe, J Mark Cock, Myriam Valero, Denis Roze, Nicolas Salamin, Susana M Coelho

Journal of Evolutionary Biology, vol. 34, Wiley Online Library, 2021, pp. 992-1009

Recent and historical gene flow in cultivars, landraces, and a wild taxon of Cucurbita pepo in Mexico

Carmina Martínez-González, Gabriela Castellanos-Morales, Josué Barrera-Redondo, Guillermo Sánchez-De La Vega, Helena S Hernández-Rosales, Jaime Gasca-Pineda, Erika Aguirre-Planter, Alejandra Moreno-Letelier, Ana E Escalante, Salvador Montes-Hernández, Rafael Lira-Saade, Luis E Eguiarte

Frontiers in Ecology and Evolution, Frontiers, 2021, p. 307

Landrace diversity and local selection criteria of domesticated squashes and gourds (Cucurbita) in the central Andean mountain range of Peru: Tomayquichua, Huánuco

Josué Barrera-Redondo, Helena S Hernández-Rosales, Verónica Cañedo-Torres, Katia Aréstegui-Alegría, Juan Torres-Guevara, Fabiola Parra, Ignacio Torres-García, Alejandro Casas

Botanical Sciences, vol. 98, 2020, pp. 101-116

Gourds and tendrils of Cucurbitaceae: how their shape diversity, molecular and morphological novelties evolved via whole-genome duplications

Josué Barrera-Redondo, Rafael Lira-Saade, Luis E Eguiarte

Molecular Plant, vol. 13, Elsevier, 2020, pp. 1108-1110

Genomic, transcriptomic and epigenomic tools to study the domestication of plants and animals: a field guide for beginners

Josué Barrera-Redondo, Daniel Piñero, Luis E Eguiarte

Frontiers in Genetics, vol. 11, Frontiers Media SA, 2020, p. 742

Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats

Yocelyn T Gutiérrez-Guerrero, Enrique Ibarra-Laclette, Carlos Martínez del Río, Josué Barrera-Redondo, Eria A Rebollar, Jorge Ortega, Livia León-Paniagua, Araxi Urrutia, Erika Aguirre-Planter, Luis E Eguiarte

GigaScience, vol. 9, Oxford University Press, 2020, pp. giaa059

Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation

Mirna Vázquez-Rosas-Landa, Gabriel Yaxal Ponce-Soto, Jonás A Aguirre-Liguori, Shalabh Thakur, Enrique Scheinvar, Josué Barrera-Redondo, Enrique Ibarra-Laclette, David S Guttman, Luis E Eguiarte, Valeria Souza

BMC Genomics, vol. 21, Springer, 2020, pp. 1-18

Evolutionary dynamics of transferred sequences between organellar genomes in Cucurbita

Xitlali Aguirre-Dugua, Gabriela Castellanos-Morales, Leslie M Paredes-Torres, Helena S Hernández-Rosales, Josué Barrera-Redondo, Guillermo Sánchez-de la Vega, Fernando Tapia-Aguirre, Karen Y Ruiz-Mondragón, Enrique Scheinvar, Paulina Hernández, ..., Luis E Eguiarte

Journal of Molecular Evolution, vol. 87, Springer, 2019, pp. 327-342

Rates of molecular evolution in tree ferns are associated with body size, environmental temperature, and biological productivity

Josué Barrera-Redondo, Santiago Ramírez-Barahona, Luis E Eguiarte

Evolution, vol. 72, Wiley Online Library, 2018, pp. 1050-1062

Genomic signals of adaptation towards mutualism and sociality in two ambrosia beetle complexes

Jazmín Blaz, Josué Barrera-Redondo, Mirna Vázquez-Rosas-Landa, Anahí Canedo-Téxon, Eneas Aguirre von Wobeser, Daniel Carrillo, Richard Stouthamer, Akif Eskalen, Emanuel Villafán, Alexandro Alonso-Sánchez, ..., Enrique Ibarra-Laclette

Life, vol. 9, MDPI, 2018, p. 2

Historical biogeography and phylogeny of Cucurbita: insights from ancestral area reconstruction and niche evolution

Gabriela Castellanos-Morales, Leslie M Paredes-Torres, Niza Gámez, Helena S Hernández-Rosales, Guillermo Sánchez-de la Vega, Josué Barrera-Redondo, Erika Aguirre-Planter, Alejandra Vázquez-Lobo, Salvador Montes-Hernández, Rafael Lira-Saade, Luis E Eguiarte

Molecular Phylogenetics and Evolution, vol. 128, Elsevier, 2018, pp. 38-54

Domesticación, diversidad y recursos genéticos y genómicos de México: El caso de las calabazas

Luis E Eguiarte, Helena S Hernández-Rosales, Josué Barrera-Redondo, Gabriela Castellanos-Morales, Leslie M Paredes-Torres, Guillermo Sánchez-de la Vega, Karen Y Ruiz-Mondragón, Alejandra Vázquez-Lobo, Salvador Montes-Hernández, Erika Aguirre-Planter, others

TIP. Revista especializada en ciencias químico-biológicas, vol. 21, Universidad Nacional Autónoma de México, Facultad de Estudios Superiores Zaragoza, 2018, pp. 85-101

Rates of ecological divergence and body size evolution are correlated with species diversification in scaly tree ferns

Santiago Ramírez-Barahona, Josué Barrera-Redondo, Luis E Eguiarte

Proceedings of the Royal Society B: Biological Sciences, vol. 283, The Royal Society, 2016, p. 20161098