Developmental pathways underlying sexual differentiation in the U/V sex chromosome system of giant kelp

Daniel Liesner, Guillaume G. Cossard, Min Zheng, Olivier Godfroy, Josué Barrera-Redondo, Fabian B Haas, Susana M Coelho

Developmental Cell, available online, 2025

Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems

France Denoeud, Olivier Godfroy, Corinne Cruaud, Svenja Heesch, Zofia Nehr, Nachida Tadrent, Arnaud Couloux, Loraine Brillet-Guéguen, Ludovic Delage, Dean Mckeown, Taizo Motomura, Duncan Sussfeld, Xiao Fan, Lisa Mazéas, Nicolas Terrapon, Josué Barrera-Redondo, Romy Petroll, Lauric Reynes, Seok-Wan Choi, Jihoon Jo, Kavitha Uthanumallian, Kenny Bogaert, Céline Duc, Pélagie Ratchinski, Agnieszka Lipinska, Benjamin Noel, Eleanor A. Murphy, Martin Lohr, Ananya Khatei, Pauline Hamon-Giraud, Christophe Vieira, et al.

Cell, vol. 187(24), 2024, pp. 6943-6965

3D chromatin maps of a brown alga reveal U/V sex chromosome spatial organization

Pengfei Liu, Jeromine Vigneau, Rory J. Craig, Josué Barrera-Redondo, Elena Avdievich, Claudia Martinho, Michael Borg, Fabian B. Haas, Chang Liu, Susana M Coelho

Nature Communications, vol. 15(1), 2024, p. 9590

A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis

Bethan F Manley, Jaruwatana S Lotharukpong, Josué Barrera-Redondo, Gokalp Yildirir, Jana Sperschneider, Nicolas Corradi, Uta Paszkowski, Eric A Miska, Alexandra Dallaire

G3: Genes, Genomes, Genetics, vol. 13(6), Cold Spring Harbor Laboratory, 2023, pp. jkad077

Population genomics of domesticated Cucurbita ficifolia reveals a recent bottleneck and low gene flow with wild relatives

Xitlali Aguirre-Dugua, Josué Barrera-Redondo, Jaime Gasca-Pineda, Alejandra Vázquez-Lobo, Andrea López-Camacho, Guillermo Sánchez-de la Vega, Gabriela Castellanos-Morales, Enrique Scheinvar, Erika Aguirre-Planter, Rafael Lira-Saade, Luis E. Eguiarte

Plants, vol. 12(23), 2023, p. 3989

The domestication of Cucurbita argyrosperma as revealed by the genome of its wild relative

Josué Barrera-Redondo, Guillermo Sánchez-de La Vega, Jonás A Aguirre-Liguori, Gabriela Castellanos-Morales, Yocelyn T Gutiérrez-Guerrero, Xitlali Aguirre-Dugua, Erika Aguirre-Planter, Maud I Tenaillon, Rafael Lira-Saade, Luis E Eguiarte

Horticulture Research, vol. 8, Oxford Academic, 2021, p. 109

Evolution of life cycles and reproductive traits: insights from the brown algae

Svenja Heesch, Martha Serrano-Serrano, Josué Barrera-Redondo, Rémy Luthringer, Akira F Peters, Christophe Destombe, J Mark Cock, Myriam Valero, Denis Roze, Nicolas Salamin, Susana M Coelho

Journal of Evolutionary Biology, vol. 34, Wiley Online Library, 2021, pp. 992-1009

Recent and historical gene flow in cultivars, landraces, and a wild taxon of Cucurbita pepo in Mexico

Carmina Martínez-González, Gabriela Castellanos-Morales, Josué Barrera-Redondo, Guillermo Sánchez-De La Vega, Helena S Hernández-Rosales, Jaime Gasca-Pineda, Erika Aguirre-Planter, Alejandra Moreno-Letelier, Ana E Escalante, Salvador Montes-Hernández, Rafael Lira-Saade, Luis E Eguiarte

Frontiers in Ecology and Evolution, Frontiers, 2021, p. 307

Landrace diversity and local selection criteria of domesticated squashes and gourds (Cucurbita) in the central Andean mountain range of Peru: Tomayquichua, Huánuco

Josué Barrera-Redondo, Helena S Hernández-Rosales, Verónica Cañedo-Torres, Katia Aréstegui-Alegría, Juan Torres-Guevara, Fabiola Parra, Ignacio Torres-García, Alejandro Casas

Botanical Sciences, vol. 98, 2020, pp. 101-116

Gourds and tendrils of Cucurbitaceae: how their shape diversity, molecular and morphological novelties evolved via whole-genome duplications

Josué Barrera-Redondo, Rafael Lira-Saade, Luis E Eguiarte

Molecular Plant, vol. 13, Elsevier, 2020, pp. 1108-1110

Genomic, transcriptomic and epigenomic tools to study the domestication of plants and animals: a field guide for beginners

Josué Barrera-Redondo, Daniel Piñero, Luis E Eguiarte

Frontiers in Genetics, vol. 11, Frontiers Media SA, 2020, p. 742

Genomic consequences of dietary diversification and parallel evolution due to nectarivory in leaf-nosed bats

Yocelyn T Gutiérrez-Guerrero, Enrique Ibarra-Laclette, Carlos Martínez del Río, Josué Barrera-Redondo, Eria A Rebollar, Jorge Ortega, Livia León-Paniagua, Araxi Urrutia, Erika Aguirre-Planter, Luis E Eguiarte

GigaScience, vol. 9, Oxford University Press, 2020, pp. giaa059

Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation

Mirna Vázquez-Rosas-Landa, Gabriel Yaxal Ponce-Soto, Jonás A Aguirre-Liguori, Shalabh Thakur, Enrique Scheinvar, Josué Barrera-Redondo, Enrique Ibarra-Laclette, David S Guttman, Luis E Eguiarte, Valeria Souza

BMC Genomics, vol. 21, Springer, 2020, pp. 1-18

Evolutionary dynamics of transferred sequences between organellar genomes in Cucurbita

Xitlali Aguirre-Dugua, Gabriela Castellanos-Morales, Leslie M Paredes-Torres, Helena S Hernández-Rosales, Josué Barrera-Redondo, Guillermo Sánchez-de la Vega, Fernando Tapia-Aguirre, Karen Y Ruiz-Mondragón, Enrique Scheinvar, Paulina Hernández, ..., Luis E Eguiarte

Journal of Molecular Evolution, vol. 87, Springer, 2019, pp. 327-342

Rates of molecular evolution in tree ferns are associated with body size, environmental temperature, and biological productivity

Josué Barrera-Redondo, Santiago Ramírez-Barahona, Luis E Eguiarte

Evolution, vol. 72, Wiley Online Library, 2018, pp. 1050-1062

Genomic signals of adaptation towards mutualism and sociality in two ambrosia beetle complexes

Jazmín Blaz, Josué Barrera-Redondo, Mirna Vázquez-Rosas-Landa, Anahí Canedo-Téxon, Eneas Aguirre von Wobeser, Daniel Carrillo, Richard Stouthamer, Akif Eskalen, Emanuel Villafán, Alexandro Alonso-Sánchez, ..., Enrique Ibarra-Laclette

Life, vol. 9, MDPI, 2018, p. 2

Historical biogeography and phylogeny of Cucurbita: insights from ancestral area reconstruction and niche evolution

Gabriela Castellanos-Morales, Leslie M Paredes-Torres, Niza Gámez, Helena S Hernández-Rosales, Guillermo Sánchez-de la Vega, Josué Barrera-Redondo, Erika Aguirre-Planter, Alejandra Vázquez-Lobo, Salvador Montes-Hernández, Rafael Lira-Saade, Luis E Eguiarte

Molecular Phylogenetics and Evolution, vol. 128, Elsevier, 2018, pp. 38-54

Domesticación, diversidad y recursos genéticos y genómicos de México: El caso de las calabazas

Luis E Eguiarte, Helena S Hernández-Rosales, Josué Barrera-Redondo, Gabriela Castellanos-Morales, Leslie M Paredes-Torres, Guillermo Sánchez-de la Vega, Karen Y Ruiz-Mondragón, Alejandra Vázquez-Lobo, Salvador Montes-Hernández, Erika Aguirre-Planter, others

TIP. Revista especializada en ciencias químico-biológicas, vol. 21, Universidad Nacional Autónoma de México, Facultad de Estudios Superiores Zaragoza, 2018, pp. 85-101

Rates of ecological divergence and body size evolution are correlated with species diversification in scaly tree ferns

Santiago Ramírez-Barahona, Josué Barrera-Redondo, Luis E Eguiarte

Proceedings of the Royal Society B: Biological Sciences, vol. 283, The Royal Society, 2016, p. 20161098